Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCKDHB_chr6_80101671_80351270	0/0	t0004	2492	26	6	0	19	0	1	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0005	2492	17	3	6	3	0	5	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0006	2491	16	0	5	8	1	2	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0007	2491	9	4	0	4	1	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	1/0	t0008	2490	8	1	0	3	0	3	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0009	2486	6	6	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0010	2485	5	5	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0011	2490	4	4	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0012	2490	4	4	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0013	2491	4	0	0	4	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0014	2485	3	3	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0015	2485	2	1	1	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0016	2486	2	0	0	2	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0017	2489	2	2	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0018	2485	2	2	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0019	2485	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0020	2485	1	0	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0021	2485	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0022	2485	1	0	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0023	2485	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0024	2497	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0025	2487	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0026	2485	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/1	t0027	2485	1	0	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0028	2485	1	0	0	0	0	1	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0029	2487	1	0	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0030	2487	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0031	2485	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0032	2490	1	0	0	0	0	1	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0033	2490	1	0	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0034	2492	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0035	2492	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0036	2492	1	0	0	0	0	1	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0037	2492	1	0	0	1	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0038	2490	1	1	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDK_chr16_31103386_31117791	1/1	t0001	798	296	88	68	98	12	28	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	t0002	798	2	0	2	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	t0003	798	1	1	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	t0004	798	1	1	0	0	0	0	copy fasta	BCKDK	chr16	31103386	31117791
BCL10_chr1_85260776_85281632	1/0	t0001	2132	99	28	23	40	1	6	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/1	t0002	2131	85	3	8	62	3	8	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0003	2131	74	27	13	19	3	12	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0004	2133	53	12	10	22	3	6	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0005	2132	48	0	1	39	2	6	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0006	2123	18	0	5	11	0	2	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0007	2131	8	8	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0008	2131	8	3	4	0	1	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0009	2134	5	0	3	2	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0010	2133	4	0	2	0	1	1	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0011	2142	3	3	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632