JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGLEC10_chr19_51405020_51422642	0/0	t0021	1143	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0022	1141	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0023	1143	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0024	1143	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0025	1141	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0026	1141	1	0	0	0	1	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0027	1141	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0028	1141	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0029	1141	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0030	1141	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0031	1141	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC11_chr19_49943985_49966172	1/1	t0001	1077	355	70	77	149	13	44	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0002	1077	57	2	2	47	0	6	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0003	1078	14	11	3	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0004	1077	6	6	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0005	1076	5	1	0	3	1	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0006	1077	5	5	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0007	1077	2	2	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0008	1077	2	0	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0009	1077	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0010	1077	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0011	1076	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0012	1077	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0013	1077	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	t0014	1077	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC12_chr19_51486227_51506800	1/1	t0001	482	334	55	57	173	7	40	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0002	482	40	27	3	5	5	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0003	482	40	5	9	15	2	9	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0004	482	7	6	1	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0005	482	7	0	4	0	2	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0006	482	3	3	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	t0007	482	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC14_chr19_51634478_51651825	1/0	t0001	3944	88	25	7	46	1	8	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0002	3947	17	1	13	0	2	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0003	3943	17	0	2	12	0	3	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0004	3941	9	0	8	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0005	3945	8	1	5	0	1	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0006	3939	6	1	4	0	0	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/1	t0007	3939	6	0	5	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0008	3941	6	1	1	0	0	4	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0009	3945	6	0	0	6	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0010	3945	6	0	0	6	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0011	3939	5	1	0	3	0	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0012	3947	5	5	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0013	3947	5	0	5	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0014	3942	4	0	3	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0015	3948	4	4	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0016	3945	4	0	4	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0017	3941	3	0	0	0	2	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0018	3937	3	0	2	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825