JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGLEC14_chr19_51634478_51651825	0/0	t0069	3948	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0070	3948	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0071	3948	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0072	3948	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0073	3948	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0074	3949	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0075	3949	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0076	3943	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0077	3948	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0078	3944	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0079	3944	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0080	3944	1	0	0	0	0	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0081	3943	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0082	3943	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0083	3943	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0084	3949	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0085	3944	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0086	3950	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0087	3947	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0088	3946	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0089	3946	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0090	3944	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0091	3945	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0092	3945	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0093	3945	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0094	20382	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0095	3945	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	t0096	3946	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC15_chr18_45820675_45849094	1/0	t0001	1962	217	33	35	110	8	30	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0002	1966	107	13	16	69	1	8	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/1	t0003	1962	17	0	11	0	3	2	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0004	1961	14	10	1	1	2	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0005	1973	11	11	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0006	1966	8	1	2	3	0	2	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0007	1965	6	6	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0008	1961	4	4	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0009	1966	4	0	0	4	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0010	1964	3	3	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0011	1966	2	0	2	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0012	1964	2	2	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0013	1963	2	0	2	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0014	1962	2	1	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0015	1964	2	0	0	2	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0016	1960	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0017	1960	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0018	1966	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0019	1965	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0020	1960	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0021	1964	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0022	1966	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094