JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGLEC5_chr19_51605960_51635401	0/0	t0018	1357	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0019	1357	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0020	1357	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0021	1357	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0022	1329	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0023	1291	1	0	0	0	1	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0024	1291	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0025	1290	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC6_chr19_51512819_51536670	0/1	t0001	2289	168	29	42	68	6	22	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	1/0	t0002	2286	90	1	11	68	2	7	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0003	2287	35	2	3	20	3	7	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0004	2290	33	13	4	12	1	3	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0005	2284	15	8	5	0	1	1	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0006	2285	10	1	1	3	3	2	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0007	2286	9	9	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0008	2287	8	2	0	6	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0009	2286	5	0	0	5	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0010	2289	5	0	2	0	0	3	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0011	2287	4	0	3	0	0	1	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0012	2286	4	2	1	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0013	2287	3	3	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0014	2288	3	0	0	2	0	1	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0015	2285	2	2	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0016	2287	2	2	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0017	2288	2	2	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0018	2287	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0019	2287	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0020	2285	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0021	2286	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0022	2289	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0023	2287	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0024	2284	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0025	2285	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0026	2285	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0027	2286	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0028	2286	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0029	2288	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0030	2289	1	1	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0031	2289	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0032	2289	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0033	2289	1	0	0	0	0	1	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0034	2320	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0035	2289	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0036	2285	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	t0037	2286	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC7_chr19_51137301_51158526	1/1	t0001	351	395	84	75	172	16	46	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	t0002	351	5	4	1	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	t0003	351	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	t0004	351	1	0	1	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	t0005	351	1	0	1	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526