JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGLEC7_chr19_51137301_51158526	0/0	t0006	351	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC8_chr19_51445997_51463454	1/1	t0001	1450	209	33	52	72	14	36	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0002	1449	75	4	0	68	0	3	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0003	1449	63	36	11	13	0	3	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0004	1449	57	6	12	32	4	3	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0005	1450	15	15	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0006	1445	10	0	0	10	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0007	1449	7	0	0	7	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0008	1449	5	0	0	5	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0009	1450	3	0	0	3	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0010	1449	2	0	0	2	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0011	1449	1	0	1	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0012	1449	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0013	1450	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0014	1449	1	0	0	0	0	1	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0015	1449	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	t0016	1450	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC9_chr19_51119906_51135310	1/1	t0001	301	439	95	80	196	16	50	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	t0002	301	3	3	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLECL1_chr19_51246080_51274330	1/0	t0001	1390	142	14	16	81	8	22	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/1	t0002	1390	112	29	25	43	6	8	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0003	1390	102	38	17	44	0	3	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0004	1390	12	5	1	4	0	2	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0005	1389	6	0	2	0	1	3	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0006	1390	5	0	0	5	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0007	1390	3	3	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0008	1390	3	0	0	3	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0009	1390	2	2	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0010	1390	1	0	1	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0011	1390	1	0	1	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0012	1390	1	1	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0013	1390	1	0	0	0	1	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0014	1390	1	1	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0015	1390	1	1	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0016	1390	1	1	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0017	1390	1	1	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	t0018	1390	1	0	1	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGMAR1_chr9_34629722_34642787	0/1	t0001	1001	252	33	50	127	10	31	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0002	999	117	30	17	66	2	2	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0003	1003	26	25	1	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0004	997	15	0	4	1	4	6	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0005	1003	9	2	1	0	0	6	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	1/0	t0006	1001	5	3	1	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0007	999	3	3	0	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0008	999	3	0	0	3	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0009	1005	2	1	1	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0010	1005	2	0	0	2	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0011	1001	1	1	0	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0012	1001	1	0	0	0	0	1	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	t0013	1001	1	0	0	1	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787