JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGMAR1_chr9_34629722_34642787	0/0	t0014	1001	1	0	1	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIK1_chr21_43409483_43432131	0/0	t0001	2394	8	8	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0002	2396	8	8	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0003	2396	5	1	0	0	0	4	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0004	2391	2	2	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0005	2393	2	0	0	0	0	2	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0006	2398	2	0	0	0	0	2	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0007	2400	2	2	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0008	2396	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0009	2395	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	t0010	2398	1	1	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK2_chr11_111597449_111735855	0/0	t0001	6841	34	8	7	14	1	4	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/1	t0002	6841	19	1	4	8	2	3	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0003	6841	15	3	5	3	2	2	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0004	6839	12	11	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	1/0	t0005	6842	11	8	2	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0006	6841	8	0	5	3	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0007	6841	8	8	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0008	6841	8	5	3	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0009	6841	6	5	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0010	6821	5	5	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0011	6841	5	1	2	0	2	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0012	6841	4	1	1	1	1	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0013	6841	3	0	3	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0014	6828	2	0	2	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0015	6841	2	2	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0016	6821	2	2	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0017	6842	2	2	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0018	6840	2	2	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0019	6841	2	0	2	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0020	6843	2	0	2	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0021	6842	2	2	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0022	6841	2	0	0	2	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0023	6841	2	1	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0024	6840	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0025	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0026	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0027	6842	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0028	6841	1	0	0	0	0	1	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0029	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0030	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0031	6841	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0032	6821	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0033	6841	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0034	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0035	6842	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0036	6841	1	0	0	0	1	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0037	6840	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0038	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0039	6840	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855