JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIK2_chr11_111597449_111735855	0/0	t0040	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0041	6841	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0042	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0043	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0044	6842	1	0	0	0	1	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0045	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0046	6841	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0047	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0048	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0049	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0050	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0051	6840	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0052	6820	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0053	6839	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0054	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0055	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0056	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0057	6841	1	0	0	0	0	1	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0058	6841	1	0	0	0	0	1	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0059	6841	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0060	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0061	6841	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0062	6842	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	t0063	6841	1	0	0	1	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK3_chr11_116838402_117103428	1/0	t0001	2255	100	8	12	65	1	13	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/1	t0002	2254	80	12	22	33	4	8	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0003	2226	39	15	5	19	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0004	2255	35	4	3	22	1	5	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0005	2237	25	21	4	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0006	2225	22	0	3	5	3	11	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0007	2249	19	3	2	10	0	4	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0008	2252	10	8	2	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0009	2285	8	0	5	0	2	1	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0010	2252	4	4	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0011	2224	3	3	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0012	2292	2	0	1	0	1	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0013	2254	2	2	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0014	2225	1	0	0	0	0	1	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0015	2237	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0016	2255	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0017	2283	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0018	2334	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0019	2279	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0020	2280	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0021	2255	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0022	2245	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0023	2254	1	0	0	0	0	1	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0024	2241	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0025	2321	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0026	2255	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428