JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIK3_chr11_116838402_117103428	0/0	t0027	2255	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0028	2254	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0029	2226	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	t0030	2254	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIKE1_chr1_114764479_114785685	1/0	t0001	4871	181	16	35	102	6	21	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/1	t0002	4871	65	17	13	17	5	12	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0003	4872	26	16	4	2	1	3	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0004	4872	22	1	14	0	2	5	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0005	4871	7	7	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0006	4872	6	5	1	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0007	4871	6	6	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0008	4871	5	5	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0009	4872	3	0	0	2	0	1	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0010	4871	3	0	2	0	0	1	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0011	4871	3	3	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0012	4871	2	0	2	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0013	4872	2	2	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0014	4871	2	0	0	2	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0015	4872	2	2	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0016	4871	2	0	0	2	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0017	4871	2	2	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0018	4871	2	0	0	0	0	2	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0019	4872	2	0	0	0	2	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0020	4872	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0021	4872	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0022	4872	1	0	0	0	0	1	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0023	4871	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0024	4871	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0025	4872	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0026	4871	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0027	4872	1	0	1	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0028	4871	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0029	4872	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0030	4871	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0031	4871	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0032	4871	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0033	4871	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	t0034	4871	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIL1_chr5_138941724_139203368	1/1	t0001	504	190	64	36	60	4	24	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	t0002	504	6	1	2	3	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	t0003	504	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	t0004	504	1	0	0	1	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	t0005	534	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	t0006	504	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIM1_chr6_100380009_100469921	0/0	t0001	6122	53	0	6	36	4	7	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0002	6134	42	9	7	16	1	9	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/1	t0003	6132	36	8	7	14	4	2	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0004	6119	19	0	5	14	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0005	6122	18	1	1	13	1	2	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0006	6130	16	14	1	0	0	1	copy fasta	SIM1	chr6	100380009	100469921