JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIM1_chr6_100380009_100469921	0/0	t0007	6124	13	0	4	9	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0008	6119	11	3	5	1	2	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	1/0	t0009	6128	9	4	3	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0010	6138	6	3	1	1	1	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0011	6136	5	3	0	2	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0012	6134	4	0	0	4	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0013	6124	4	0	0	2	2	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0014	6118	4	0	0	4	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0015	6122	3	3	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0016	6136	2	0	2	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0017	6122	2	0	2	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0018	6119	2	0	0	2	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0019	6132	2	0	1	0	1	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0020	6124	2	2	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0021	6136	2	0	2	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0022	6132	2	2	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0023	6136	2	2	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0024	6120	2	0	0	2	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0025	6124	2	2	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0026	6121	2	0	1	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0027	6121	2	1	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0028	6122	2	0	0	2	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0029	6140	1	0	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0030	6132	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0031	6119	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0032	6138	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0033	6118	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0034	6134	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0035	6119	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0036	6136	1	0	0	0	1	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0037	6136	1	0	0	0	1	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0038	6134	1	0	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0039	6130	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0040	6128	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0041	6122	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0042	6132	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0043	6130	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0044	6128	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0045	6142	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0046	6138	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0047	6134	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0048	6138	1	0	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0049	6128	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0050	6142	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0051	6136	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0052	6134	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0053	6128	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0054	6136	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0055	6130	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0056	6130	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921