Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOT13_chr6_24662077_24710046	0/0	t0037	3618	1	0	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0038	3619	1	0	0	0	0	1	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0039	3618	1	0	0	0	1	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0040	3619	1	0	0	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0041	3616	1	0	0	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0042	3616	1	0	0	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0043	3616	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0044	3617	1	0	0	0	0	1	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0045	3619	1	0	0	0	0	1	copy fasta	ACOT13	chr6	24662077	24710046
ACOT1_chr14_73532143_73548796	0/0	t0001	421	63	31	12	6	3	11	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	t0002	422	27	2	14	1	2	8	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	t0003	421	9	9	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	t0004	421	8	8	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	t0005	421	6	5	1	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT2_chr14_73564213_73580655	0/0	t0001	171	398	77	71	194	13	43	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	t0002	171	16	8	6	0	1	1	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	t0003	171	7	7	0	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT4_chr14_73586873_73600766	1/1	t0001	200	398	84	72	188	13	39	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	t0002	200	9	1	6	0	1	1	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	t0003	200	1	1	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT6_chr14_73607517_73624888	1/1	t0001	105	393	88	68	185	10	40	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	t0002	105	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT7_chr1_6259272_6398767	0/1	t0001	695	90	6	23	41	3	16	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0002	695	46	23	2	20	0	1	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0003	695	36	25	5	5	1	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0004	695	36	20	6	4	0	6	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0005	695	7	7	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0006	695	5	4	1	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0007	695	4	2	2	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0008	695	3	0	0	3	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0009	695	3	3	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0010	695	2	2	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0011	695	2	2	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0012	695	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0013	695	1	0	0	1	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	1/0	t0014	694	1	0	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0015	695	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0016	695	1	0	1	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	t0017	695	1	0	0	0	0	1	copy fasta	ACOT7	chr1	6259272	6398767
ACOT8_chr20_45836721_45862392	1/1	t0001	195	411	87	71	193	16	42	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	t0002	195	10	9	1	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	t0003	195	1	0	0	1	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT9_chrX_23696055_23748276	0/0	t0001	2965	49	7	9	23	3	7	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0002	2972	46	7	10	23	3	3	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0003	2971	42	5	1	34	0	2	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	1/0	t0004	2972	21	1	9	9	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0005	2965	16	5	5	2	1	3	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0006	2972	14	12	1	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/1	t0007	2972	13	0	2	6	1	3	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0008	2972	10	3	2	3	0	2	copy fasta	ACOT9	chrX	23696055	23748276