Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL10_chr1_85260776_85281632	0/0	t0012	2131	3	3	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0013	2133	3	3	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0014	2132	3	0	3	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0015	2133	3	0	0	0	2	1	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0016	2132	3	1	1	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0017	2131	3	0	3	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0018	2132	2	0	0	2	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0019	2132	2	1	1	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0020	2131	2	1	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0021	2132	2	0	0	2	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0022	2131	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0023	2132	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0024	2133	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0025	2132	1	1	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0026	2141	1	1	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0027	2131	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0028	2132	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0029	2132	1	1	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0030	2132	1	1	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0031	2133	1	0	1	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0032	2131	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0033	2132	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0034	2131	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0035	2132	1	0	0	1	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	t0036	2131	1	1	0	0	0	0	copy fasta	BCL10	chr1	85260776	85281632
BCL11A_chr2_60452194_60558654	0/0	t0001	3597	38	9	12	6	2	9	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0002	3599	33	3	13	12	2	3	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0003	3600	32	7	2	16	1	6	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0004	3598	19	4	5	4	0	6	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0005	3604	15	2	5	5	2	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0006	3605	9	0	3	4	1	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0007	3597	8	5	2	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0008	3600	7	1	1	3	0	2	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0009	3601	7	0	1	4	1	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0010	3595	5	2	1	0	1	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0011	3598	5	1	4	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0012	3603	5	2	1	0	1	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0013	3606	5	2	1	1	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0014	3595	4	1	0	0	1	2	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0015	3601	4	3	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0016	3607	4	1	2	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0017	3596	3	1	1	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0018	3602	3	2	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0019	3597	2	1	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0020	3598	2	0	1	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0021	3599	2	2	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0022	3601	2	0	0	2	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0023	3602	2	1	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0024	3606	2	0	1	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0025	3593	1	0	0	0	1	0	copy fasta	BCL11A	chr2	60452194	60558654