JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIM1_chr6_100380009_100469921	0/0	t0057	6130	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0058	6130	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0059	6128	1	0	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0060	6134	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0061	6117	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0062	6128	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0063	6120	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0064	6118	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0065	6122	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0066	6124	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0067	6124	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0068	6120	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0069	6128	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0070	6116	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0071	6123	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0072	6129	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0073	6117	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0074	6113	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0075	6119	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0076	6134	1	0	1	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0077	6117	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0078	6134	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	t0079	6132	1	0	0	0	0	1	copy fasta	SIM1	chr6	100380009	100469921
SIM2_chr21_36694115_36754917	0/0	t0001	2458	114	14	26	62	7	5	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0002	2453	73	27	14	24	3	5	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/1	t0003	2457	40	5	12	2	3	17	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0004	2459	35	6	4	23	0	2	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	1/0	t0005	2458	24	3	2	17	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0006	2453	16	0	3	13	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0007	2458	15	1	7	3	1	3	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0008	2459	8	1	0	6	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0009	2457	6	6	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0010	2453	5	0	0	0	0	5	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0011	2458	5	4	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0012	2460	5	4	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0013	2458	5	4	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0014	2457	5	0	2	1	1	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0015	2453	4	2	2	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0016	2454	3	0	0	3	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0017	2457	3	3	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0018	2457	3	1	1	0	1	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0019	2457	3	0	0	1	0	2	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0020	2459	2	1	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0021	2458	2	2	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0022	2453	2	0	0	2	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0023	2453	2	0	0	1	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0024	2458	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0025	2458	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0026	2458	1	0	0	0	1	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0027	2458	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917