JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIM2_chr21_36694115_36754917	0/0	t0028	2453	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0029	2454	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0030	2458	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0031	2453	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0032	2453	1	0	0	0	1	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0033	2454	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0034	2457	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0035	2453	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0036	2458	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0037	2459	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0038	2458	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0039	2458	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0040	2457	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0041	2458	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0042	2453	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0043	2453	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0044	2453	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0045	2458	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0046	2453	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0047	2453	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0048	2453	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0049	2457	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0050	2460	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0051	2458	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0052	2459	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	t0053	2459	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIMC1_chr5_176233424_176350989	0/1	t0001	631	299	77	52	132	8	29	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	t0002	631	58	9	8	34	2	5	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	t0003	631	1	1	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	t0004	631	1	1	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	1/0	t0005	630	1	0	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIN3A_chr15_75364379_75456690	0/1	t0001	2901	274	62	50	120	11	30	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0002	2899	20	0	1	18	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	1/0	t0003	2902	13	4	0	7	1	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0004	2901	3	2	1	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0005	2901	2	0	0	2	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0006	2901	2	2	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0007	2901	1	0	0	1	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0008	2901	1	0	0	1	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0009	2900	1	0	0	0	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0010	2901	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0011	2901	1	0	0	1	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0012	2901	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0013	2901	1	0	0	0	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0014	2902	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0015	2901	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	t0016	2901	1	0	0	0	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3B_chr19_16824398_16885349	1/0	t0001	1646	112	15	35	47	5	9	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0002	1646	111	37	20	38	5	11	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0003	1646	53	0	6	41	1	5	copy fasta	SIN3B	chr19	16824398	16885349