JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIN3B_chr19_16824398_16885349	0/0	t0004	1646	30	25	3	0	0	2	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/1	t0005	1646	28	0	5	20	1	1	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0006	1646	15	1	4	7	0	3	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0007	1646	4	4	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0008	1646	2	0	2	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0009	1646	2	2	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0010	1646	2	2	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0011	1646	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0012	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0013	1646	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0014	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0015	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0016	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0017	1620	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0018	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0019	1646	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0020	1646	1	0	0	0	0	1	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0021	1646	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0022	1646	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	t0023	1646	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SINHCAF_chr12_31275584_31331150	0/1	t0001	2276	224	44	65	80	11	23	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0002	2276	56	0	0	50	1	5	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0003	2275	26	3	6	10	1	6	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0004	2284	9	1	0	7	0	1	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0005	2272	6	6	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0006	2276	6	6	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0007	2276	4	4	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0008	2276	4	4	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0009	2276	2	2	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0010	2275	2	0	0	2	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0011	2286	2	2	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0012	2287	2	2	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0013	2275	1	0	0	0	0	1	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0014	2276	1	0	1	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0015	2275	1	0	0	1	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0016	2289	1	1	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0017	2290	1	1	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	t0018	2274	1	0	0	0	1	0	copy fasta	SINHCAF	chr12	31275584	31331150
SIPA1L1_chr14_71315476_71746209	1/1	t0001	2601	90	22	27	25	8	6	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0002	2599	67	19	12	22	2	12	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0003	2601	12	9	3	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0004	2599	2	0	0	2	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0005	2601	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0006	2601	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	t0007	2601	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L2_chr1_232392965_232635133	1/0	t0001	1746	129	37	25	46	5	15	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0002	1746	52	1	15	20	3	13	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0003	1746	45	8	5	30	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/1	t0004	1746	13	7	1	0	2	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0005	1746	10	0	6	0	2	2	copy fasta	SIPA1L2	chr1	232392965	232635133