JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIPA1L2_chr1_232392965_232635133	0/0	t0006	1746	7	7	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0007	1746	5	5	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0008	1746	5	3	2	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0009	1746	3	3	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0010	1746	3	3	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0011	1746	2	2	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0012	1746	2	1	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0013	1746	2	2	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0014	1746	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0015	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0016	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0017	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0018	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0019	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0020	1746	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0021	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0022	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0023	1746	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0024	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0025	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0026	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	t0027	1746	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L3_chr19_37902208_38213369	0/0	t0001	2659	35	14	9	9	1	2	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0002	2659	27	19	2	5	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/1	t0003	2659	26	11	5	5	2	2	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0004	2659	23	1	4	9	4	5	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	1/0	t0005	2659	15	6	4	0	1	3	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0006	2661	8	0	2	4	0	2	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0007	2661	7	0	2	5	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0008	2660	3	3	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0009	2656	2	2	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0010	2657	2	2	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0011	2657	2	2	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0012	2659	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0013	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0014	2660	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0015	2659	1	0	0	0	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0016	2659	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0017	2659	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0018	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0019	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0020	2661	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0021	2661	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0022	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0023	2658	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0024	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	t0025	2659	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1_chr11_65633101_65655912	1/1	t0001	371	269	74	56	116	12	9	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0002	371	69	2	8	45	4	10	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0003	371	44	3	6	21	2	12	copy fasta	SIPA1	chr11	65633101	65655912