JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIPA1_chr11_65633101_65655912	0/0	t0004	371	11	11	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0005	371	6	6	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0006	371	3	0	0	0	0	3	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0007	371	2	0	0	2	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0008	371	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	t0009	371	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIRPA_chr20_1890407_1945592	0/0	t0001	3066	112	8	41	36	13	14	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0002	3072	61	0	3	46	1	11	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0003	3066	49	0	5	42	0	2	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0004	3066	38	0	13	24	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0005	3063	14	11	1	1	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0006	3063	11	10	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0007	3072	11	10	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0008	3021	11	11	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0009	3066	10	0	0	10	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/1	t0010	3066	10	8	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0011	3066	9	1	6	0	2	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0012	3061	6	6	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0013	3069	5	5	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0014	3066	4	4	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0015	3072	4	0	0	4	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0016	3072	3	0	0	0	0	3	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0017	3066	3	3	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0018	3072	3	3	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0019	3060	3	3	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0020	3066	3	0	0	2	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0021	3066	3	0	0	3	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0022	3066	2	0	0	2	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0023	3072	2	2	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0024	3072	2	1	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0025	3066	2	0	0	2	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0026	3066	2	2	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	1/0	t0027	3066	2	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0028	3066	2	2	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0029	3072	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0030	3072	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0031	3072	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0032	3072	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0033	3072	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0034	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0035	3063	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0036	3063	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0037	3051	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0038	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0039	3069	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0040	3066	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0041	3029	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0042	3066	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0043	3072	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0044	3072	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592