JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIRPA_chr20_1890407_1945592	0/0	t0045	3072	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0046	3066	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0047	3066	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0048	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0049	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0050	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0051	3066	1	0	0	0	1	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0052	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0053	3066	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0054	3066	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0055	3066	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0056	3063	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0057	3063	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0058	3066	1	0	0	0	1	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	t0059	3066	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPB1_chr20_1556385_1625009	0/0	t0001	4181	149	14	22	86	2	25	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	1/0	t0002	4181	79	5	18	50	0	5	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0003	4154	26	3	9	3	0	11	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0004	4181	22	20	2	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0005	4181	18	8	3	0	4	3	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0006	4181	8	5	1	0	2	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/1	t0007	4181	8	1	2	0	1	3	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0008	4181	6	0	2	0	1	3	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0009	4181	5	4	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0010	4179	5	4	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0011	4181	4	3	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0012	4181	3	3	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0013	4181	3	3	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0014	4181	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0015	4181	2	0	0	2	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0016	4181	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0017	4181	2	0	2	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0018	4154	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0019	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0020	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0021	4181	1	0	0	0	1	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0022	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0023	4181	1	0	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0024	4154	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0025	4181	1	0	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0026	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0027	4181	1	0	0	0	1	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0028	4162	1	0	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0029	4179	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0030	4181	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0031	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0032	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0033	4181	1	0	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0034	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	t0035	4181	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009