JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIRT3_chr11_210030_241342	0/0	t0018	1683	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0019	1683	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0020	1683	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT4_chr12_120297321_120318249	1/1	t0001	272	373	90	66	155	16	44	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	t0002	272	5	4	1	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	t0003	59	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	t0004	272	1	0	1	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT5_chr6_13569601_13620158	1/0	t0001	3632	94	21	14	49	4	5	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/1	t0002	3632	77	13	20	29	4	10	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0003	3633	75	13	8	44	2	8	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0004	3632	41	11	15	7	3	5	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0005	3632	25	2	1	20	0	2	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0006	3632	11	0	0	11	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0007	3632	5	0	0	5	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0008	3632	5	0	3	0	2	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0009	3632	3	1	1	0	1	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0010	3631	3	3	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0011	3633	3	0	0	3	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0012	3632	3	3	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0013	3632	3	0	3	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0014	3632	3	3	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0015	3633	3	0	1	0	0	2	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0016	3632	2	0	1	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0017	3632	2	1	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0018	3632	2	2	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0019	3633	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0020	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0021	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0022	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0023	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0024	3632	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0025	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0026	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0027	3632	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0028	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0029	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0030	3632	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0031	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0032	3633	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0033	3633	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0034	3633	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0035	3633	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0036	3633	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0037	3633	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0038	3631	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0039	3631	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0040	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0041	3633	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0042	3632	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0043	3633	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158