JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIRT5_chr6_13569601_13620158	0/0	t0044	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0045	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0046	3632	1	0	0	1	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0047	3632	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0048	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0049	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0050	3633	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0051	3633	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	t0052	3632	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT6_chr19_4169109_4187563	0/1	t0001	533	288	91	55	84	18	39	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	1/0	t0002	533	73	1	16	50	0	5	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0003	533	44	0	0	40	0	4	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0004	533	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0005	533	1	1	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0006	533	1	1	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0007	533	1	0	1	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	t0008	533	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT7_chr17_81906939_81923176	1/1	t0001	523	322	67	55	155	8	35	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0002	523	11	11	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0003	523	2	0	2	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0004	523	2	2	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0005	523	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0006	523	1	0	0	0	0	1	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0007	523	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0008	523	1	0	0	1	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	t0009	523	1	0	1	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIT1_chr9_35644295_35655931	1/1	t0001	632	373	95	65	147	16	48	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	t0002	632	57	0	9	46	0	2	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	t0003	632	1	0	0	1	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	t0004	632	1	1	0	0	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	t0005	632	1	0	0	1	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	t0006	632	1	0	0	1	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIVA1_chr14_104748147_104764654	1/1	t0001	225	356	86	70	153	13	32	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	t0002	225	55	5	14	27	1	8	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	t0003	223	4	0	0	4	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	t0004	225	2	2	0	0	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	t0005	225	1	1	0	0	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIX1_chr14_60638421_60654477	0/1	t0001	3154	144	31	29	58	5	20	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0002	3153	74	6	11	46	3	8	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	1/0	t0003	3151	60	14	7	29	2	7	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0004	3155	21	4	3	10	1	3	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0005	3155	13	1	3	4	1	4	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0006	3155	8	0	0	8	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0007	3152	5	0	4	0	1	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0008	3155	5	2	2	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0009	3152	4	0	0	4	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0010	3147	3	0	0	3	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0011	3154	3	0	0	3	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0012	3153	3	0	0	3	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0013	3155	2	2	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477