Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL11A_chr2_60452194_60558654	1/0	t0026	3595	1	0	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0027	3584	1	0	1	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0028	3597	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0029	3597	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0030	3597	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0031	3596	1	0	0	0	0	1	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0032	3598	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0033	3598	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0034	3598	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0035	3596	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0036	3596	1	0	0	0	1	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0037	3599	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0038	3598	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0039	3598	1	0	1	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0040	3599	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0041	3598	1	0	1	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0042	3599	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0043	3599	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0044	3598	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0045	3600	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0046	3600	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0047	3600	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0048	3613	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0049	3600	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0050	3600	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0051	3600	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0052	3599	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0053	3602	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0054	3600	1	0	1	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0055	3602	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0056	3601	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0057	3603	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0058	3604	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0059	3603	1	0	0	1	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0060	3601	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0061	3603	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0062	3607	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0063	3605	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0064	3606	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0065	3608	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0066	3609	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/1	t0067	3595	1	0	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11A_chr2_60452194_60558654	0/0	t0068	3595	1	1	0	0	0	0	copy fasta	BCL11A	chr2	60452194	60558654
BCL11B_chr14_99164287_99277197	0/1	t0001	5845	62	6	8	37	2	8	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	1/0	t0002	5844	37	9	6	15	2	4	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0003	5846	34	6	6	15	0	7	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0004	5845	23	6	5	9	1	2	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0005	5846	19	1	5	7	1	5	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0006	5855	18	0	9	0	3	6	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0007	5847	14	0	6	5	0	3	copy fasta	BCL11B	chr14	99164287	99277197