JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIX1_chr14_60638421_60654477	0/0	t0014	3154	2	2	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0015	3151	2	2	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0016	3153	2	1	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0017	3154	2	0	0	2	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0018	3151	2	0	0	0	0	2	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0019	3156	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0020	3152	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0021	3153	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0022	3151	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0023	3152	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0024	3153	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0025	3154	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0026	3154	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0027	3157	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0028	3151	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0029	3154	1	0	0	0	0	1	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0030	3156	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0031	3156	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0032	3156	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0033	3156	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0034	3150	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0035	3151	1	0	0	0	0	1	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0036	3154	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0037	3155	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0038	3154	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0039	3154	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0040	3154	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0041	3154	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0042	3155	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0043	3154	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0044	3153	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0045	3156	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0046	3156	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0047	3151	1	0	0	0	0	1	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0048	3152	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0049	3154	1	0	0	1	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0050	3150	1	0	0	0	0	1	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0051	3154	1	0	0	0	1	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0052	3157	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0053	3155	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0054	3153	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	t0055	3153	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX2_chr2_45000182_45014452	0/0	t0001	1331	320	81	68	127	15	29	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0002	1331	34	7	7	16	0	4	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0003	1331	34	1	1	30	0	2	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0004	1331	18	0	7	7	1	3	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0005	1331	13	0	0	13	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0006	1331	4	0	0	4	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0007	1331	2	0	1	0	1	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0008	1331	2	2	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452