JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIX2_chr2_45000182_45014452	0/0	t0009	1331	2	0	0	0	0	2	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0010	1331	2	2	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0011	1331	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0012	1331	1	0	0	1	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0013	1331	1	0	0	1	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0014	1331	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0015	1331	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0016	1331	1	0	0	1	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	t0017	1331	1	0	0	0	1	0	copy fasta	SIX2	chr2	45000182	45014452
SIX3_chr2_44936702_44951071	0/0	t0001	1711	90	13	12	48	7	10	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0002	1712	74	7	10	45	2	10	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0003	1710	33	2	1	26	0	4	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0004	1711	23	2	4	13	0	4	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	1/0	t0005	1715	20	2	13	3	1	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0006	1708	20	7	5	5	1	2	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0007	1710	15	8	1	4	0	2	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0008	1714	13	1	4	4	4	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0009	1712	12	1	3	5	0	3	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0010	1711	12	8	2	2	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0011	1714	9	0	5	2	0	2	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0012	1711	8	7	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0013	1712	7	1	5	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0014	1711	6	3	0	3	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0015	1713	5	0	2	3	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0016	1713	5	0	0	1	1	3	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0017	1711	5	0	5	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0018	1712	5	4	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0019	1711	4	4	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0020	1711	4	3	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0021	1712	4	3	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/1	t0022	1711	4	0	0	3	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0023	1711	4	0	0	4	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0024	1710	4	0	0	4	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0025	1709	4	0	0	4	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0026	1713	3	2	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0027	1710	3	0	0	3	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0028	1710	3	3	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0029	1708	3	3	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0030	1712	2	0	0	2	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0031	1712	2	0	0	2	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0032	1715	2	0	0	0	0	2	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0033	1709	2	1	0	0	0	1	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0034	1707	2	1	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0035	1706	2	2	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0036	1711	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0037	1711	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0038	1716	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0039	1714	1	0	0	0	0	1	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0040	1713	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0041	1713	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071