JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIX3_chr2_44936702_44951071	0/0	t0042	1713	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0043	1712	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0044	1713	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0045	1711	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0046	1712	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0047	1711	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0048	1710	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0049	1710	1	0	0	0	0	1	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0050	1711	1	0	0	0	0	1	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0051	1710	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0052	1711	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0053	1711	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0054	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0055	1710	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0056	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0057	1697	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0058	1710	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0059	1713	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0060	1714	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0061	1715	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0062	1710	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0063	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0064	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0065	1708	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0066	1707	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0067	1705	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0068	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	t0069	1709	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX4_chr14_60704539_60729351	0/0	t0001	4153	166	32	34	71	7	22	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	1/0	t0002	4146	51	8	1	38	0	3	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0003	4153	38	0	11	19	3	5	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0004	4155	17	8	4	5	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0005	4146	9	7	1	0	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0006	4146	7	0	0	7	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0007	4146	5	0	0	5	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0008	4152	5	0	0	5	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/1	t0009	4153	5	0	2	0	0	2	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0010	4153	4	0	1	0	0	3	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0011	4154	4	0	0	2	0	2	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0012	4151	3	2	1	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0013	4146	3	0	0	3	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0014	4153	3	0	0	3	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0015	4153	2	0	0	2	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0016	4147	2	2	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0017	4149	2	1	1	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0018	4146	2	0	0	0	0	2	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0019	4146	2	2	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0020	4146	2	2	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0021	4146	2	0	0	0	0	2	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0022	4153	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351