JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIX4_chr14_60704539_60729351	0/0	t0023	4153	1	0	0	0	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0024	4153	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0025	4153	1	0	0	0	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0026	4153	1	0	0	0	1	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0027	4150	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0028	4153	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0029	4153	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0030	4153	1	0	0	0	1	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0031	4153	1	0	0	0	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0032	4153	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0033	4146	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0034	4146	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0035	4146	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0036	4148	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0037	4147	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0038	4153	1	0	0	0	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0039	4153	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0040	4154	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0041	4154	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0042	4158	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	t0043	4153	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX5_chr19_45759785_45774252	1/1	t0001	1125	374	56	81	175	16	44	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0002	1126	7	7	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0003	1125	7	7	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0004	1125	3	0	1	0	2	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0005	1125	3	3	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0006	1125	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0007	1125	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0008	1126	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0009	1125	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0010	1125	1	0	1	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0011	1125	1	0	1	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0012	1125	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0013	1125	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0014	1125	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0015	1125	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0016	1125	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0017	1126	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0018	1125	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0019	1126	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0020	1126	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0021	1126	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	t0022	1126	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX6_chr14_60504146_60517850	0/1	t0001	1830	288	32	47	161	14	33	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	1/0	t0002	1852	73	22	5	32	2	11	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0003	1830	5	2	0	3	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0004	1836	4	0	0	4	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0005	1831	4	2	2	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0006	1830	4	4	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0007	1830	3	0	0	3	0	0	copy fasta	SIX6	chr14	60504146	60517850