JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKA1_chr18_50370046_50399168	0/0	t0032	2080	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0033	2082	1	0	0	1	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0034	2081	1	0	0	0	0	1	copy fasta	SKA1	chr18	50370046	50399168
SKA2_chr17_59104857_59160186	0/0	t0001	2444	89	45	13	22	3	6	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	1/1	t0002	2444	87	14	21	45	1	4	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0003	2445	52	7	12	13	4	16	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0004	2445	17	1	7	6	1	2	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0005	2445	13	2	2	5	2	2	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0006	2443	8	6	2	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0007	2445	5	0	0	5	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0008	2446	5	2	1	1	0	1	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0009	2443	3	0	1	1	0	1	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0010	2444	3	2	1	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0011	2443	1	0	0	0	0	1	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0012	2444	1	0	0	0	0	1	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0013	2445	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0014	2445	1	0	0	0	1	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0015	2444	1	0	1	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0016	2444	1	0	1	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0017	2444	1	1	0	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0018	2444	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0019	2444	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0020	2445	1	1	0	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0021	2446	1	1	0	0	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	t0022	2445	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA3_chr13_21148595_21181552	0/0	t0001	1631	167	10	35	98	6	18	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0002	1631	58	1	12	33	2	10	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0003	1631	52	39	7	0	0	6	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	1/0	t0004	1631	34	26	4	0	1	2	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0005	1631	34	5	1	21	4	3	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/1	t0006	1631	9	0	6	0	0	2	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0007	1631	6	6	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0008	1631	6	0	6	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0009	1631	4	0	0	0	1	3	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0010	1631	2	0	0	2	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0011	1631	1	0	0	1	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0012	1631	1	0	1	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0013	1631	1	1	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0014	1631	1	1	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0015	1631	1	1	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	t0016	1631	1	0	0	1	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKAP1_chr17_48128442_48435214	1/1	t0001	477	286	82	58	110	10	24	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	t0002	477	2	0	0	2	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	t0003	477	2	2	0	0	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	t0004	477	1	0	0	1	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	t0005	477	1	0	0	1	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP2_chr7_26662068_26869590	0/0	t0001	2761	104	10	22	58	5	9	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	1/0	t0002	2760	87	33	15	30	2	6	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/1	t0003	2760	52	10	3	33	1	4	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0004	2759	15	1	1	10	1	2	copy fasta	SKAP2	chr7	26662068	26869590