JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKAP2_chr7_26662068_26869590	0/0	t0005	2759	9	8	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0006	2759	6	6	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0007	2760	4	1	3	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0008	2759	4	2	2	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0009	2760	3	3	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0010	2760	2	2	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0011	2759	2	2	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0012	2760	1	0	0	0	1	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0013	2760	1	0	0	1	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0014	2761	1	0	0	1	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0015	2760	1	1	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0016	2759	1	0	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0017	2759	1	0	0	0	0	1	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0018	2758	1	0	0	1	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	t0019	2760	1	1	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKIC2_chr6_31954175_31974751	0/1	t0001	55	439	94	82	200	18	44	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	t0002	55	14	0	0	14	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC3_chr5_95458894_95559977	1/0	t0001	982	241	31	46	126	10	27	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/1	t0002	981	39	3	1	31	0	3	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0003	981	38	23	11	1	3	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0004	981	17	9	1	0	1	6	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0005	982	6	6	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0006	982	4	0	0	4	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0007	981	2	2	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0008	982	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0009	982	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0010	981	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0011	982	1	0	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	t0012	981	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC8_chr15_78278235_78304609	1/1	t0001	285	436	96	74	200	16	48	copy fasta	SKIC8	chr15	78278235	78304609
SKIDA1_chr10_21508475_21530682	1/0	t0001	3875	76	17	23	22	4	9	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/1	t0002	3878	15	1	5	4	3	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0003	3874	15	14	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0004	3876	10	8	0	2	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0005	3874	10	1	4	1	2	2	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0006	3876	10	1	3	3	0	3	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0007	3876	7	2	1	3	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0008	3876	6	0	0	6	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0009	3876	5	4	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0010	3876	5	5	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0011	3875	4	0	0	4	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0012	3877	3	3	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0013	3879	3	1	1	0	1	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0014	3876	3	0	0	1	0	2	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0015	3877	3	3	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0016	3874	3	3	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0017	3878	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0018	3865	2	0	2	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0019	3878	2	0	2	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0020	3877	2	0	0	0	1	1	copy fasta	SKIDA1	chr10	21508475	21530682