JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKIDA1_chr10_21508475_21530682	0/0	t0021	3875	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0022	3876	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0023	3877	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0024	3876	2	1	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0025	3878	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0026	3877	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0027	3874	1	0	0	0	1	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0028	3866	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0029	3878	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0030	3879	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0031	3878	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0032	3877	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0033	3878	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0034	3879	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0035	3878	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0036	3879	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0037	3878	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0038	3878	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0039	3876	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0040	3877	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0041	3877	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0042	3876	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0043	3878	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0044	3876	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0045	3877	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0046	3878	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0047	3878	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0048	3874	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0049	3875	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0050	3876	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0051	3877	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0052	3876	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0053	3877	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0054	3877	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0055	3876	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0056	3875	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0057	3873	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0058	3875	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0059	3875	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	t0060	3878	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIL_chr3_170352715_170401835	0/0	t0001	5096	65	12	9	36	1	7	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0002	5098	34	1	9	22	2	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0003	5095	21	0	13	3	2	3	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0004	5095	21	1	5	11	0	4	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	1/0	t0005	5101	19	3	7	3	0	5	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0006	5092	15	0	1	13	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/1	t0007	5096	15	0	4	10	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0008	5099	14	5	2	5	1	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0009	5097	9	2	0	6	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0010	5102	8	2	2	3	0	1	copy fasta	SKIL	chr3	170352715	170401835