JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKIL_chr3_170352715_170401835	0/0	t0011	5104	7	7	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0012	5098	7	1	2	0	0	4	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0013	5100	6	5	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0014	5097	6	0	1	5	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0015	5101	5	0	0	5	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0016	5095	5	3	1	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0017	5101	3	2	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0018	5093	3	0	1	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0019	5101	3	3	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0020	5102	3	3	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0021	5100	3	3	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0022	5097	3	3	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0023	5097	3	0	1	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0024	5098	3	0	0	3	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0025	5103	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0026	5103	2	0	2	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0027	5100	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0028	5101	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0029	5102	2	0	0	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0030	5102	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0031	5103	2	1	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0032	5104	2	1	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0033	5102	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0034	5103	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0035	5105	2	2	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0036	5097	2	0	1	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0037	5099	2	0	2	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0038	5101	2	0	1	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0039	5097	2	0	0	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0040	5096	2	0	0	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0041	5099	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0042	5103	1	0	0	0	1	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0043	5095	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0044	5091	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0045	5092	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0046	5092	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0047	5091	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0048	5100	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0049	5104	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0050	5104	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0051	5103	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0052	5101	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0053	5103	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0054	5101	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0055	5103	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0056	5101	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0057	5096	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0058	5086	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0059	5086	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0060	5099	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835