JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKIL_chr3_170352715_170401835	0/0	t0061	5095	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0062	5095	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0063	5096	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0064	5096	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0065	5098	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0066	5096	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0067	5097	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0068	5100	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0069	5098	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0070	5098	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0071	5099	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0072	5098	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0073	5098	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0074	5097	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0075	5094	1	0	0	0	1	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0076	5095	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0077	5095	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0078	5096	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0079	5096	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0080	5096	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0081	5097	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0082	5100	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0083	5096	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0084	5097	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0085	5096	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0086	5097	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0087	5099	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0088	5100	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	t0089	5104	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKI_chr1_2223319_2315213	0/0	t0001	3900	47	12	7	18	2	8	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0002	3898	39	12	6	13	5	3	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0003	3899	39	1	7	29	0	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0004	3899	24	2	1	16	2	3	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0005	3899	16	0	13	0	1	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	1/0	t0006	3897	12	0	2	2	2	5	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0007	3901	11	4	3	2	0	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0008	3897	11	0	0	11	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0009	3898	8	7	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0010	3899	7	2	1	4	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0011	3900	6	6	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0012	3901	6	1	2	3	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0013	3862	6	0	4	0	0	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0014	3900	4	2	1	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0015	3900	4	0	0	2	0	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0016	3985	3	3	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0017	3900	3	1	0	2	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0018	3900	3	0	0	2	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0019	3898	3	1	1	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0020	3898	3	3	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0021	3899	3	1	2	0	0	0	copy fasta	SKI	chr1	2223319	2315213