Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL11B_chr14_99164287_99277197	0/0	t0008	5843	9	9	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0009	5845	9	9	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0010	5856	9	0	5	1	1	2	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0011	5846	6	1	1	3	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0012	5850	5	0	0	5	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0013	5857	5	0	4	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0014	5844	4	4	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0015	5846	3	3	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0016	5845	3	3	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0017	5848	3	1	1	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0018	5831	2	0	2	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0019	5845	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0020	5845	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0021	5837	2	0	0	2	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0022	5852	2	0	0	2	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0023	5847	2	0	0	2	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0024	5846	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0025	5846	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0026	5847	2	0	2	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0027	5848	2	2	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0028	5847	2	0	0	2	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0029	5856	2	0	2	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0030	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0031	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0032	5842	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0033	5844	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0034	5844	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0035	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0036	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0037	5844	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0038	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0039	5802	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0040	5844	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0041	5844	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0042	5844	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0043	5844	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0044	5845	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0045	5845	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0046	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0047	5845	1	0	0	0	1	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0048	5844	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0049	5845	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0050	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0051	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0052	5847	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0053	5853	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0054	5853	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0055	5854	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0056	5855	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0057	5836	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197