JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SKI_chr1_2223319_2315213	0/0	t0022	3900	2	2	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0023	3902	2	0	0	0	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0024	3899	2	2	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0025	3898	2	0	0	2	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0026	3900	2	2	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0027	3898	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0028	4023	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0029	4024	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0030	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0031	3898	1	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0032	3900	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0033	3984	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0034	4023	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0035	3899	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0036	3900	1	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0037	3901	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0038	3900	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0039	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0040	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0041	3857	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0042	3919	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0043	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0044	3901	1	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0045	3899	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0046	3899	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0047	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0048	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0049	3942	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0050	3901	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0051	3899	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0052	3899	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0053	3943	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0054	3898	1	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0055	3900	1	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0056	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0057	3898	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0058	3899	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0059	3902	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0060	3863	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0061	3900	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0062	3779	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0063	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0064	4011	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0065	4013	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0066	3898	1	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0067	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0068	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0069	3900	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0070	3898	1	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0071	3897	1	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213