JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKI_chr1_2223319_2315213	0/0	t0072	3898	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0073	3897	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0074	3897	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0075	3900	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0076	3901	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0077	3860	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0078	3898	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0079	3901	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0080	3898	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0081	3898	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0082	3899	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/1	t0083	3858	1	0	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0084	3897	1	0	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0085	3898	1	0	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0086	3898	1	0	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0087	3898	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	t0088	3899	1	0	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKOR1_chr15_67820509_67839582	1/0	t0001	841	156	52	31	49	3	20	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0002	844	147	10	29	90	7	11	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/1	t0003	838	91	16	14	43	4	13	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0004	847	12	5	4	3	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0005	844	5	0	0	5	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0006	841	4	4	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0007	838	4	4	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0008	843	3	3	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0009	841	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0010	838	1	0	0	1	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0011	844	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0012	841	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0013	841	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	t0014	857	1	0	0	1	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR2_chr18_47201169_47256660	1/1	t0001	1062	150	45	25	55	8	15	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0002	1062	135	34	20	64	3	14	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0003	1062	50	7	8	31	3	1	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0004	1062	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0005	1062	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0006	1062	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0007	1062	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0008	1062	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	t0009	1062	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKP1_chr5_134143935_134181950	1/0	t0001	8895	85	18	13	40	3	10	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0002	8897	54	1	7	39	0	7	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/1	t0003	8895	15	1	1	3	2	7	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0004	8903	15	3	2	4	2	4	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0005	8895	13	0	0	8	0	5	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0006	8897	10	0	0	10	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0007	8896	9	1	3	5	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0008	8895	9	9	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0009	8898	8	0	1	6	0	1	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0010	8902	7	0	5	0	0	2	copy fasta	SKP1	chr5	134143935	134181950