JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKP1_chr5_134143935_134181950	0/0	t0011	8903	6	0	6	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0012	8894	5	2	1	2	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0013	8895	5	0	0	5	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0014	8896	5	0	1	4	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0015	8887	5	5	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0016	8896	5	5	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0017	8894	4	4	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0018	8893	4	3	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0019	8901	4	0	0	4	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0020	8896	3	0	1	0	0	2	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0021	8898	3	1	1	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0022	8903	3	0	0	3	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0023	8903	3	0	2	0	1	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0024	8897	2	0	1	0	1	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0025	8898	2	0	0	2	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0026	8897	2	0	0	2	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0027	8897	2	2	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0028	8894	2	2	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0029	8890	2	1	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0030	8889	2	2	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0031	8895	2	0	0	2	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0032	8896	2	2	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0033	8899	2	1	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0034	8903	2	2	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0035	8903	2	0	2	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0036	8889	2	1	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0037	8896	1	0	0	0	0	1	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0038	8895	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0039	8893	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0040	8896	1	0	0	0	1	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0041	8895	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0042	8895	1	0	0	0	1	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0043	8895	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0044	8894	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0045	8894	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0046	8939	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0047	8893	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0048	8894	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0049	8894	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0050	8894	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0051	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0052	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0053	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0054	8895	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0055	8895	1	0	0	0	0	1	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0056	8895	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0057	8896	1	0	0	0	0	1	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0058	8896	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0059	8896	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0060	8896	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950