JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKP1_chr5_134143935_134181950	0/0	t0061	8894	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0062	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0063	8895	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0064	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0065	8899	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0066	8898	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0067	8898	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0068	8896	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0069	8898	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0070	8896	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0071	8896	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0072	8894	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0073	8895	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0074	8896	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0075	8895	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0076	8897	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0077	8895	1	0	0	0	0	1	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0078	8895	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0079	8897	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0080	8889	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0081	8894	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0082	8904	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0083	8902	1	0	0	0	1	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0084	8898	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0085	8899	1	0	1	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0086	8902	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0087	8903	1	0	0	1	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0088	8889	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0089	8891	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP1_chr5_134143935_134181950	0/0	t0090	8889	1	1	0	0	0	0	copy fasta	SKP1	chr5	134143935	134181950
SKP2_chr5_36147111_36189319	0/0	t0001	2440	90	2	19	50	5	14	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	1/0	t0002	2441	77	10	9	57	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0003	2442	55	7	24	16	3	5	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0004	2441	47	17	1	17	0	12	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0005	2442	32	0	5	27	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0006	2442	26	22	4	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0007	2440	20	18	0	0	0	2	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0008	2442	8	3	3	1	0	1	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0009	2441	6	0	0	2	0	4	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0010	2441	6	0	0	6	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0011	2440	5	0	0	5	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0012	2442	3	0	0	3	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0013	2441	2	0	0	2	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0014	2442	2	0	0	0	0	2	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0015	2440	2	2	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0016	2441	2	2	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0017	2441	2	0	2	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0018	2440	2	2	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0019	2440	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0020	2441	1	0	1	0	0	0	copy fasta	SKP2	chr5	36147111	36189319