JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SKP2_chr5_36147111_36189319	0/0	t0021	2441	1	0	0	1	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0022	2441	1	0	0	0	0	1	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0023	2440	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0024	2440	1	0	1	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0025	2440	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0026	2440	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0027	2442	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0028	2442	1	0	1	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0029	2442	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/1	t0030	2442	1	0	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0031	2442	1	0	0	0	0	1	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0032	2441	1	1	0	0	0	0	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	t0033	2442	1	0	0	1	0	0	copy fasta	SKP2	chr5	36147111	36189319
SLA2_chr20_36607318_36651196	1/1	t0001	1952	291	66	62	112	13	36	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0002	1952	19	8	3	7	0	1	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0003	1952	12	0	4	8	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0004	1955	9	9	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0005	1952	8	0	2	2	0	4	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0006	1955	6	5	1	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0007	1952	3	3	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0008	1952	1	0	1	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0009	1952	1	0	0	0	1	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0010	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0011	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0012	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0013	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0014	1952	1	0	0	1	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0015	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0016	1952	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0017	1955	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0018	1952	1	0	0	0	0	1	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	t0019	1952	1	0	1	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLAIN1_chr13_77692687_77769229	1/1	t0001	1237	222	48	46	93	7	26	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0002	1237	63	20	9	17	7	10	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0003	1236	10	9	1	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0004	1237	2	1	1	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0005	1237	1	1	0	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0006	1237	1	0	1	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	t0007	1236	1	1	0	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN2_chr4_48336529_48431201	1/1	t0001	4336	146	37	24	64	9	10	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0002	4335	77	19	18	24	3	13	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0003	4336	41	2	11	16	4	8	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0004	4335	26	3	1	19	0	3	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0005	4335	9	3	2	0	2	2	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0006	4331	8	8	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0007	4336	4	0	0	4	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0008	4336	4	0	4	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0009	4334	4	0	2	0	0	2	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0010	4336	2	0	0	2	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0011	4336	2	2	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201