JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLAIN2_chr4_48336529_48431201	0/0	t0012	4331	2	2	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0013	4335	2	0	0	2	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0014	4331	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0015	4335	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0016	4336	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0017	4335	1	0	0	0	0	1	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0018	4335	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0019	4335	1	0	0	0	0	1	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0020	4335	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0021	4335	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0022	4337	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0023	4336	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0024	4336	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0025	4336	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0026	4336	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0027	4336	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0028	4335	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0029	4334	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0030	4334	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0031	4334	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0032	4336	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0033	4335	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	t0034	4336	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAMF1_chr1_160603106_160652044	0/1	t0001	2743	167	17	27	92	7	23	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	1/0	t0002	2742	80	17	20	32	3	7	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0003	2743	58	12	14	23	2	7	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0004	2743	25	3	6	16	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0005	2743	25	24	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0006	2743	6	0	0	6	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0007	2743	5	5	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0008	2743	4	0	4	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0009	2743	4	0	0	4	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0010	2743	4	4	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0011	2743	3	0	0	3	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0012	2743	3	2	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0013	2743	3	0	1	0	0	2	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0014	2743	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0015	2743	2	0	2	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0016	2743	2	0	0	2	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0017	2743	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0018	2743	2	0	0	2	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0019	2743	2	0	1	0	0	1	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0020	2743	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0021	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0022	2743	1	0	0	0	0	1	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0023	2743	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0024	2743	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0025	2743	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0026	2743	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0027	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044