JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLAMF1_chr1_160603106_160652044	0/0	t0028	2743	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0029	2742	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0030	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0031	2742	1	0	0	0	0	1	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0032	2743	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0033	2743	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0034	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0035	2742	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0036	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0037	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0038	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0039	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	t0040	2743	1	1	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF6_chr1_160480036_160528255	0/1	t0001	1735	283	66	49	120	11	36	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0002	1735	77	14	20	38	3	2	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0003	1735	7	7	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	1/0	t0004	1735	6	0	2	0	0	3	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0005	1735	5	0	0	5	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0006	1735	4	1	3	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0007	1735	3	0	0	2	0	1	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0008	1735	3	0	0	3	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0009	1735	1	1	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0010	1735	1	0	0	1	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0011	1735	1	0	0	1	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0012	1735	1	1	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0013	1735	1	1	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	t0014	1735	1	1	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF7_chr1_160734247_160759821	0/0	t0001	1700	165	32	25	90	7	11	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0002	1700	140	2	37	75	4	22	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/1	t0003	1700	55	19	11	18	2	4	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	1/0	t0004	1700	29	19	3	6	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0005	1700	21	0	2	13	0	6	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0006	1700	6	6	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0007	1700	4	4	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0008	1700	3	3	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0009	1700	3	3	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0010	1700	3	0	0	3	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0011	1700	2	0	0	2	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0012	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0013	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0014	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0015	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0016	1700	1	0	0	1	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0017	1700	1	0	0	0	0	1	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0018	1700	1	0	0	0	1	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0019	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	t0020	1700	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF8_chr1_159821873_159842492	1/1	t0001	2259	373	46	73	199	11	42	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0002	2259	23	21	0	2	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0003	2259	17	1	9	0	3	4	copy fasta	SLAMF8	chr1	159821873	159842492