JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLAMF8_chr1_159821873_159842492	0/0	t0004	2259	14	0	0	14	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0005	2259	14	14	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0006	2259	8	7	1	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0007	2259	6	0	2	0	2	2	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0008	2259	4	4	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0009	2259	4	4	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0010	2259	4	0	0	4	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0011	2259	1	1	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0012	2259	1	0	1	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0013	2259	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0014	2259	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0015	2303	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0016	2259	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0017	2259	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0018	2259	1	0	0	0	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	t0019	2259	1	0	0	0	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF9_chr1_159946492_159959237	0/0	t0001	270	382	92	82	148	16	44	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	t0002	270	2	2	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLA_chr8_133031728_133107602	0/1	t0001	2165	163	24	34	76	4	24	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0002	2165	43	16	6	13	0	8	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	1/0	t0003	2165	26	0	4	16	3	2	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0004	2165	16	6	6	1	2	1	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0005	2165	15	0	3	10	0	2	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0006	2164	15	7	5	0	1	2	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0007	2164	14	12	2	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0008	2165	9	8	1	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0009	2165	7	3	3	0	1	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0010	2165	6	6	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0011	2165	4	4	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0012	2164	3	3	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0013	2165	3	0	0	3	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0014	2164	3	0	1	2	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0015	2164	2	0	2	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0016	2165	2	0	0	0	0	2	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0017	2165	2	2	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0018	2165	1	0	0	1	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0019	2165	1	0	0	0	0	1	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0020	2165	1	1	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0021	2164	1	1	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0022	2165	1	1	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0023	2165	1	1	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0024	2191	1	0	0	0	1	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0025	2165	1	1	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0026	2165	1	0	0	1	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0027	2165	1	0	0	1	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	t0028	2164	1	0	1	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLBP_chr4_1687731_1717319	1/0	t0001	998	181	51	36	63	11	19	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/1	t0002	998	149	15	35	75	5	18	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0003	998	11	10	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0004	998	7	6	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319