JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLBP_chr4_1687731_1717319	0/0	t0005	998	6	0	2	0	0	4	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0006	998	6	0	1	2	0	3	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0007	998	2	0	0	2	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0008	998	2	0	0	2	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0009	998	2	2	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0010	998	2	1	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0011	998	1	0	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0012	998	1	1	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0013	998	1	0	0	0	0	1	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0014	998	1	1	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0015	998	1	1	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0016	998	1	1	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0017	998	1	1	0	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	t0018	998	1	0	0	0	0	1	copy fasta	SLBP	chr4	1687731	1717319
SLC10A1_chr14_69770416_69802241	1/1	t0001	953	334	92	71	128	7	34	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	t0002	953	3	2	1	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	t0003	953	2	2	0	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	t0004	953	1	0	0	0	1	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A2_chr13_103038998_103071417	0/0	t0001	2304	104	6	26	54	7	11	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/1	t0002	2299	100	17	21	54	0	7	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	1/0	t0003	2304	79	6	13	48	4	7	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0004	2304	60	11	6	29	2	12	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0005	2304	27	15	3	8	1	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0006	2299	20	13	2	4	0	1	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0007	2299	10	6	4	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0008	2304	4	3	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0009	2304	4	3	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0010	2299	4	4	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0011	2304	2	0	2	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0012	2299	2	2	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0013	2304	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0014	2304	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0015	2304	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0016	2304	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0017	2304	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0018	2299	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0019	2299	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0020	2299	1	0	0	0	0	1	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0021	2299	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0022	2299	1	0	0	0	0	1	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0023	2304	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	t0024	2304	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A3_chrX_154482311_154495629	1/1	t0001	662	241	73	27	105	6	28	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	t0002	662	66	4	35	17	6	4	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	t0003	662	2	0	0	0	0	2	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	t0004	662	1	0	0	0	1	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	t0005	662	1	1	0	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	t0006	663	1	0	0	1	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A4_chr4_48478343_48494526	0/0	t0001	807	157	44	18	69	5	21	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	1/1	t0002	807	156	20	35	80	8	11	copy fasta	SLC10A4	chr4	48478343	48494526