JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC10A4_chr4_48478343_48494526	0/0	t0003	807	62	28	11	16	1	6	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	t0004	808	15	3	4	2	2	4	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	t0005	807	1	1	0	0	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	t0006	807	1	0	0	1	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A5_chr8_81688631_81700058	1/1	t0001	112	426	98	68	206	14	38	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A6_chr4_86818468_86854384	0/1	t0001	490	273	48	53	136	15	20	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	1/0	t0002	490	63	37	8	12	1	4	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	t0003	490	12	11	1	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	t0004	490	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	t0005	490	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A7_chr4_146248981_146526940	0/1	t0001	2734	51	1	11	27	3	8	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	1/0	t0002	2734	34	1	7	21	2	2	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0003	2734	34	8	12	9	0	5	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0004	2734	31	16	2	10	1	2	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0005	2734	29	1	4	19	1	4	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0006	2734	26	15	3	7	1	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0007	2734	10	10	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0008	2734	9	0	0	9	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0009	2734	6	6	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0010	2734	5	1	0	3	0	1	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0011	2734	1	0	0	0	0	1	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0012	2734	1	0	0	0	0	1	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0013	2734	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0014	2734	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0015	2734	1	0	0	1	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0016	2734	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0017	2734	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0018	2734	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	t0019	2734	1	0	1	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC11A1_chr2_218377273_218401894	0/1	t0001	1957	171	15	39	79	11	26	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0002	1957	47	7	13	20	0	7	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0003	1961	47	17	14	9	3	4	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0004	1957	43	26	3	10	0	4	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0005	1961	8	0	3	3	0	2	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0006	1953	6	6	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0007	1961	4	0	0	4	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0008	1961	4	0	0	4	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0009	1957	4	2	0	0	0	2	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0010	1957	4	4	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0011	1957	4	4	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0012	1957	3	3	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0013	1957	3	0	0	3	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0014	1957	3	3	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0015	1957	2	1	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0016	1957	2	2	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0017	1957	2	0	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0018	1957	2	0	0	0	0	2	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0019	1961	2	2	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0020	1957	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0021	1957	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894