Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL11B_chr14_99164287_99277197	0/0	t0058	5851	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0059	5817	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0060	5845	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0061	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0062	5845	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0063	5845	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0064	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0065	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0066	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0067	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0068	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0069	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0070	5847	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0071	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0072	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0073	5847	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0074	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0075	5866	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0076	5867	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0077	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0078	5847	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0079	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0080	5846	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0081	5856	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0082	5856	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0083	5856	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0084	5856	1	0	0	0	1	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0085	5856	1	0	1	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0086	5868	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0087	5867	1	0	0	0	0	1	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0088	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0089	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0090	5846	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0091	5845	1	1	0	0	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL11B_chr14_99164287_99277197	0/0	t0092	5834	1	0	0	1	0	0	copy fasta	BCL11B	chr14	99164287	99277197
BCL2A1_chr15_79955892_79976196	1/1	t0001	253	433	92	78	195	18	48	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	t0002	253	2	0	0	2	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2A1_chr15_79955892_79976196	0/0	t0003	253	1	0	0	1	0	0	copy fasta	BCL2A1	chr15	79955892	79976196
BCL2L10_chr15_52104263_52117775	1/1	t0001	635	321	42	55	169	13	40	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0002	635	50	1	16	25	3	5	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0003	635	21	14	3	4	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0004	635	21	0	8	12	0	1	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0005	635	18	17	1	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0006	635	13	12	1	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0007	635	5	0	0	5	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0008	635	2	1	1	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0009	635	2	2	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0010	606	1	1	0	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0011	635	1	0	0	1	0	0	copy fasta	BCL2L10	chr15	52104263	52117775
BCL2L10_chr15_52104263_52117775	0/0	t0012	635	1	0	1	0	0	0	copy fasta	BCL2L10	chr15	52104263	52117775