JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A4_chr16_67938474_67973637	0/0	t0018	1451	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0019	1451	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0020	1451	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A5_chr20_46024215_46065150	0/0	t0001	2676	194	51	29	94	5	15	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0002	2676	100	3	10	68	7	12	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/1	t0003	2676	36	10	4	5	3	13	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0004	2682	14	2	5	5	0	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0005	2676	12	7	3	0	0	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0006	2676	6	0	6	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0007	2676	6	0	0	6	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0008	2682	4	0	2	0	2	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	1/0	t0009	2676	4	3	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0010	2682	3	0	3	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0011	2676	2	0	0	0	0	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0012	2676	2	0	0	2	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0013	2676	2	2	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0014	2676	2	2	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0015	2676	2	0	0	0	0	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0016	2676	2	0	1	0	1	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0017	2676	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0018	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0019	2676	1	0	1	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0020	2676	1	0	1	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0021	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0022	2676	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0023	2676	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0024	2676	1	0	1	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0025	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0026	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0027	2676	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0028	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	t0029	2676	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A6_chr15_34224784_34342781	0/1	t0001	4620	86	16	16	43	2	8	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0002	4607	51	7	4	39	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0003	4621	13	5	3	1	0	4	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	1/0	t0004	4620	8	6	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0005	4621	7	7	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0006	4621	7	6	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0007	4617	7	7	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0008	4604	6	6	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0009	4620	5	5	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0010	4621	5	0	2	0	0	3	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0011	4620	4	4	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0012	4620	4	0	1	0	0	3	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0013	4615	4	0	2	1	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0014	4608	3	1	0	0	1	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0015	4613	3	3	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0016	4620	3	0	3	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0017	4621	3	0	0	3	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0018	4620	3	0	0	3	0	0	copy fasta	SLC12A6	chr15	34224784	34342781