JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A6_chr15_34224784_34342781	0/0	t0019	4615	2	0	2	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0020	4607	2	0	1	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0021	4620	2	2	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0022	4620	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0023	4620	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0024	4616	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0025	4618	2	2	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0026	4620	2	2	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0027	4620	2	1	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0028	4617	2	0	2	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0029	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0030	4620	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0031	4615	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0032	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0033	4607	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0034	4607	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0035	4607	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0036	4606	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0037	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0038	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0039	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0040	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0041	4620	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0042	4620	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0043	4616	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0044	4620	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0045	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0046	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0047	4620	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0048	4607	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0049	4618	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0050	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0051	4620	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0052	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0053	4620	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0054	4621	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0055	4618	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0056	4620	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0057	4620	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0058	4621	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0059	4615	1	0	0	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	t0060	4620	1	0	0	0	1	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A7_chr5_1045384_1117063	0/0	t0001	2049	36	3	7	12	2	12	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0002	2049	23	2	4	13	1	3	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0003	2049	16	13	1	2	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0004	2049	9	6	2	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0005	2047	5	5	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0006	2049	5	5	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0007	2049	3	1	1	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0008	2049	2	0	0	2	0	0	copy fasta	SLC12A7	chr5	1045384	1117063