JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A7_chr5_1045384_1117063	0/0	t0009	2054	2	2	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0010	2049	2	1	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0011	2049	2	2	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0012	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0013	2047	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0014	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0015	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0016	2049	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0017	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0018	2049	1	0	0	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0019	2049	1	0	0	0	1	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0020	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0021	2054	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0022	2049	1	0	0	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0023	2049	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	t0024	2049	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A8_chr3_125077644_125217748	1/1	t0001	1341	102	10	25	48	3	14	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0002	1340	95	31	13	41	1	9	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0003	1341	49	6	6	28	1	8	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0004	1341	39	13	14	5	3	4	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0005	1342	9	4	4	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0006	1340	7	0	0	7	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0007	1340	7	7	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0008	1341	7	1	6	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0009	1341	7	4	0	3	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0010	1340	6	4	2	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0011	1340	5	0	5	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0012	1341	5	1	0	2	0	2	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0013	1341	4	0	0	4	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0014	1340	3	1	0	2	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0015	1341	2	2	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0016	1341	2	1	0	0	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0017	1340	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0018	1340	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0019	1340	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0020	1341	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0021	1341	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0022	1341	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0023	1342	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0024	1341	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0025	1341	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0026	1342	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0027	1340	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0028	1341	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	t0029	1340	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A9_chr7_100847713_100872010	0/1	t0001	572	415	89	69	194	18	44	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	t0002	572	4	0	0	4	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	t0003	572	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	1/0	t0004	571	1	0	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	t0005	572	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010