JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A9_chr7_100847713_100872010	0/0	t0006	572	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	t0007	572	1	0	1	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC13A1_chr7_123108531_123204969	0/1	t0001	2012	112	28	23	44	4	12	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0002	2012	96	26	21	40	1	8	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0003	2010	55	1	11	30	4	9	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0004	2013	20	4	6	8	1	1	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0005	2013	11	4	1	6	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0006	2011	8	0	1	7	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0007	2011	5	3	1	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0008	2012	5	0	0	5	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	1/0	t0009	2011	5	4	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0010	2011	4	4	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0011	2010	4	0	0	4	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0012	2012	4	3	1	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0013	2012	3	3	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0014	2012	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0015	2011	2	0	0	2	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0016	2012	2	0	2	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0017	2012	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0018	2011	1	0	1	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0019	2010	1	0	0	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0020	2011	1	0	0	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0021	2011	1	0	0	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0022	2012	1	0	0	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0023	2013	1	0	0	1	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0024	2013	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0025	2001	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0026	2012	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	t0027	2013	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A2_chr17_28468644_28502781	1/1	t0001	582	370	80	77	153	16	42	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	t0002	575	11	9	2	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	t0003	582	3	0	0	3	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	t0004	582	2	1	1	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	t0005	582	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	t0006	582	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A3_chr20_46552828_46656459	0/0	t0001	2237	112	27	17	53	5	10	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0002	2237	92	20	10	54	0	8	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0003	2237	83	10	21	33	7	12	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0004	2237	27	8	5	9	1	4	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	1/1	t0005	2233	25	3	9	1	3	7	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0006	2237	15	11	4	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0007	2237	10	0	0	10	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0008	2237	7	0	0	7	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0009	2237	5	5	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0010	2237	4	0	0	0	0	4	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0011	2233	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0012	2237	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0013	2237	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0014	2237	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0015	2237	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459