JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC13A3_chr20_46552828_46656459	0/0	t0016	2237	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0017	2237	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0018	2237	1	0	0	0	0	1	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0019	2237	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	t0020	2237	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A4_chr7_135676231_135733186	0/1	t0001	1023	98	32	16	36	6	7	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	1/0	t0002	1023	94	17	15	43	6	12	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0003	1023	73	17	23	26	1	6	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0004	1023	31	1	2	18	3	7	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0005	1023	25	0	1	20	0	4	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0006	1023	13	9	3	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0007	1023	11	4	2	1	0	4	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0008	1023	10	0	0	10	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0009	1023	6	5	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0010	1023	4	0	0	4	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0011	1023	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0012	1023	1	1	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0013	1023	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0014	1023	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0015	1023	1	1	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0016	1023	1	1	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	t0017	1023	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A5_chr17_6679719_6718369	0/0	t0001	1526	95	3	7	74	1	10	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0002	1525	70	6	22	33	1	8	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0003	1526	37	1	13	15	2	6	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	1/0	t0004	1525	29	2	12	7	1	6	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/1	t0005	1526	24	3	4	7	4	5	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0006	1525	15	2	2	9	0	2	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0007	1526	15	3	2	10	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0008	1526	8	8	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0009	1526	8	1	3	4	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0010	1526	7	0	1	5	1	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0011	1526	6	3	0	2	1	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0012	1526	6	0	1	2	0	3	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0013	1525	6	0	0	6	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0014	1526	6	0	0	6	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0015	1525	5	5	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0016	1526	5	0	0	5	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0017	1525	5	2	1	0	0	2	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0018	1525	4	3	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0019	1525	4	1	0	2	0	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0020	1525	4	4	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0021	1526	4	0	0	4	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0022	1525	4	0	0	4	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0023	1525	4	4	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0024	1525	4	4	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0025	1525	3	2	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0026	1526	3	0	0	3	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0027	1525	3	3	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0028	1525	3	0	0	2	0	1	copy fasta	SLC13A5	chr17	6679719	6718369