JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC13A5_chr17_6679719_6718369	0/0	t0029	1525	3	3	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0030	1526	3	0	3	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0031	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0032	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0033	1526	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0034	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0035	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0036	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0037	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0038	1525	2	0	1	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0039	1526	2	0	0	0	0	2	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0040	1525	2	0	0	2	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0041	1526	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0042	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0043	1525	2	2	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0044	1525	2	0	2	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0045	1525	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0046	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0047	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0048	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0049	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0050	1525	1	0	0	0	0	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0051	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0052	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0053	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0054	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0055	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0056	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0057	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0058	1525	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0059	1525	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0060	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0061	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0062	1525	1	0	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0063	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0064	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0065	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0066	1525	1	0	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0067	1526	1	0	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0068	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0069	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0070	1525	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0071	1525	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0072	1525	1	0	0	0	1	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0073	1526	1	0	0	0	0	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0074	1525	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0075	1526	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0076	1526	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	t0077	1525	1	0	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC14A1_chr18_45719181_45757520	0/1	t0001	2747	129	15	23	75	6	9	copy fasta	SLC14A1	chr18	45719181	45757520