JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC14A1_chr18_45719181_45757520	0/0	t0002	2747	83	22	8	47	0	6	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0003	2750	52	4	15	11	6	16	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0004	2746	28	2	10	7	4	5	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0005	2747	16	1	6	7	0	2	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0006	2743	14	0	1	13	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0007	2750	10	10	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0008	2747	9	0	1	8	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	1/0	t0009	2748	9	7	1	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0010	2751	8	0	0	7	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0011	2748	7	3	1	3	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0012	2749	7	7	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0013	2743	6	5	1	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0014	2749	6	6	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0015	2747	3	0	2	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0016	2749	3	3	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0017	2747	2	0	0	2	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0018	2746	2	2	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0019	2746	2	0	2	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0020	2748	2	0	0	0	0	2	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0021	2743	2	2	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0022	2750	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0023	2748	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0024	2748	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0025	2744	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0026	2737	1	0	0	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0027	2749	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0028	2747	1	0	1	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0029	2758	1	0	0	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0030	2747	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0031	2747	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0032	2747	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0033	2748	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0034	2746	1	0	1	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0035	2748	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0036	2750	1	0	1	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0037	2749	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0038	2748	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	t0039	2748	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A2_chr18_45610476_45688688	0/0	t0001	1310	99	5	12	72	1	9	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/1	t0002	1311	88	23	25	26	7	6	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0003	1311	84	13	11	49	3	8	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0004	1311	61	21	14	14	5	7	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0005	1311	23	0	5	15	0	3	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	1/0	t0006	1311	7	6	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0007	1311	6	6	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0008	1312	6	5	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0009	1311	6	5	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0010	1311	3	3	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0011	1311	2	0	0	2	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0012	1312	2	0	2	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688