JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC14A2_chr18_45610476_45688688	0/0	t0013	1310	2	0	0	2	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0014	1312	2	0	0	1	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0015	1312	2	2	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0016	1311	1	0	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0017	1312	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0018	1311	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0019	1312	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0020	1312	1	0	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0021	1310	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0022	1310	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0023	1311	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	t0024	1310	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC15A1_chr13_98678801_98757672	0/0	t0001	998	97	5	12	74	3	3	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0002	996	70	2	10	43	2	13	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	1/0	t0003	998	62	20	22	2	6	11	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0004	996	57	14	6	31	0	6	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0005	997	33	10	12	4	3	4	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0006	994	16	1	2	13	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/1	t0007	999	16	12	1	1	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0008	996	5	5	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0009	998	4	4	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0010	997	4	2	1	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0011	998	4	0	0	4	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0012	996	3	3	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0013	995	3	0	0	1	0	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0014	995	3	1	0	2	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0015	997	3	0	1	2	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0016	997	3	0	2	0	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0017	999	3	0	0	3	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0018	995	2	2	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0019	997	2	0	0	2	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0020	998	2	2	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0021	996	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0022	997	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0023	998	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0024	997	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0025	997	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0026	996	1	0	0	0	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0027	995	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0028	996	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0029	996	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0030	996	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0031	998	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0032	997	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0033	997	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0034	999	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0035	994	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	t0036	997	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A2_chr3_121889401_121949188	0/1	t0001	3258	110	27	16	57	3	6	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	1/0	t0002	3258	83	21	19	25	4	13	copy fasta	SLC15A2	chr3	121889401	121949188