JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLC16A10_chr6_111082503_111236194	0/0	t0028	9219	2	2	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0029	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0030	9211	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0031	9204	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0032	9219	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0033	9226	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0034	9225	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0035	9231	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0036	9224	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0037	9225	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0038	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0039	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0040	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0041	9228	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0042	9226	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0043	9225	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0044	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0045	9229	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0046	9221	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0047	9227	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0048	9226	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0049	9226	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0050	9226	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0051	9227	1	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0052	9224	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0053	9227	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0054	9227	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0055	9225	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0056	9226	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0057	9218	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0058	9218	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0059	9227	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0060	9229	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0061	9229	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0062	9217	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0063	9227	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0064	9228	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0065	9227	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0066	9227	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0067	9227	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0068	9225	1	0	0	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0069	9215	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0070	9226	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0071	9224	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0072	9220	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0073	9221	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0074	9225	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0075	9226	1	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0076	9228	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0077	9228	1	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194